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Cell & Gene Therapy Pharma Assay Development Services

Robust custom, fit-for-purpose single-cell multi-omic services that help you develop unique cell and gene therapy assays, from early discoveries, analytical development, to assay transfer and manufacturing.

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Analytical Development Challenges in Cell & Gene Therapy

Moving a cell and gene therapy toward the clinic means every cell is a potential liability. While your therapy may appear safe and effective on average, population level data from bulk cell & gene therapy assays can mask hidden threats.

A single-cell with an unintended off-target event, or an aberrant vector integration can have catastrophic consequences, leading to safety failures and costly clinical holds. To truly de-risk your cell and gene therapy program, you must move beyond bulk averages and identify every rare, potentially dangerous aspect of your cell and gene therapy before it negatively impacts a patient.

A rigorous analytical development and quality control process provides the critical data to characterize your cell and gene therapy, building a comprehensive product profile that ensures safety and de-risks your path to clinical success.

Custom, Fit-For-Purpose Cell & Gene Therapy Assay Development Services

To overcome the critical analytical hurdles during cell and gene therapy development, Mission Bio’s Cell and Gene Therapy Assays are developed through their Pharma Assay Development (PAD) services. These Cell and Gene Therapy Assay Development Services are a collaborative partnership with you to design, validate and deploy custom, fit-for-purpose single-cell analytical assays for your unique cell and gene therapy program needs, since we know your therapy deserves better.

Leveraging the Tapestri® platform, our Cell and Gene Therapy Assay Development Services provide you a single-cell multi-omics view to understand the complex attributes of your cell and gene therapy product with single-cell resolution – this means simultaneously measuring genotype, targeted gene expression, and phenotype all within the same cell. With this kind of resolution, the amount of data produced can be overwhelming but our bioinformatics experts simplify this data delivering definitive answers on the quality, safety, and efficacy of your therapy measured by these cell and gene therapy assays, giving you the confidence to characterize your therapy effectively throughout each phase of therapy development.

Our Cell and Gene Therapy Assay Development Services are structured in phases to deliver robust single-cell multiomic assays for your cell and gene therapy. This phase approach provides clear milestones, from the initial concepts of the cell and gene therapy assays to the final assay transfer for scaling and manufacturing of your cell and gene therapy at your preferred CRO or CDMO.

Table 1: Phases of Cell and Gene Therapy Pharma Assay Development services

PHASE 1: FIT FOR PURPOSE ASSESSMENT
  • Sample: Control cell lines
  • Includes client’s custom analyte panel
  • Sample specific protocol development
  • Initial analysis methods testing is conducted on a preliminary set of experiments to establish Tapestri for intended use
Phase 2: Preliminary assay validation
  • Sample: Experimental cell lines
  • Intent is to confirm assay specificity, sensitivity, and linearity or establish robust validation assay
  • Sample process optimization
  • Possibility to expand across multiple drug products or lots
Phase 3: Transfer GMP ready assay to Client or CDMO
  • Tapestri instrument installation, premium training
  • Operational and performance qualifications (IOQ/PQ)
  • Lot-controlled customized product bundle for transfer and assay qualification
  • Final transfer report
  • Wet lab and sequencing procedures
  • Cloud-hosted bioinformatics pipeline and user guide
  • Formal documentation

How Can Single-Cell Resolution De-Risk Cell & Gene Therapy Assays?

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With a custom cell and gene therapy assays that fits the needs of your cell and gene therapy pipeline, you can measure multiple DNA, RNA, and protein attributes simultaneously.

Figure 1: Possible attributes you can assess through our Cell and Gene Therapy Assay Development Services with single-cell high-resolution.

Table 2: Attribute considerations for developing a successful cell and gene therapy assay

Attribute
The impact in your cell and gene therapy

Vector copy number (VCN)

Unlike bulk assays that report a misleading population average, our single-cell cell and gene therapy assays can quantify the precise number of vector copies in thousands of individual cells. This reveals the true distribution of your therapeutic dose, allowing you to identify and eliminate unsafe cell populations with dangerously high copy numbers or ineffective cells with none at all, providing a far more accurate measure of your therapy products potency and safety.

Integrated vs Episomal

Determine the durability and mechanism of your cell and gene therapy by distinguishing whether your vector is integrated into the host genome or exists transiently as episomal DNA. Our single-cell cell and gene therapy assays can be designed to provide this critical information, clarifying the long-term therapeutic potential and stability of your cell and gene therapy without the need for laborious cell culturing and cloning.

Multiplex edits

For a cell and gene therapy that requires multiplex gene edits using methods like CRISPR, confirming the complete editing profile in every cell is critical to understand the editing precision and efficacy. We enable you to verify the co-occurrence of all intended edits within each individual cell, ensuring your final product is composed of cells with the precise combination of modifications required for therapeutic success.

Chromosomal aberrations & Genome integrity

Go beyond small insertions or deletions (indel) analysis to monitor for larger structural variants and chromosomal rearrangements that can occur during gene editing. Maintaining genome integrity is a paramount safety concern, and our custom, fit-for-purpose cell and gene therapy assays provide a critical QC check to detect these rare but potentially hazardous events that are invisible to standard bulk approaches.

Zygosity

Resolve the exact nature of your gene edits by determining zygosity at the single-cell level. Understand whether your gene edits are resulting in heterozygous or homozygous modifications across both alleles, which directly impacts therapeutic dose, potency, genotoxicity, and functional outcome because the cell is oftentimes the therapeutic product.

On- and off-target editing

Gain a complete understanding of your CRISPR gene editing outcomes by simultaneously measuring both on-target and off-target events in the same cell of your cell and gene therapy. This unique capability allows you to assess the true risk-benefit profile: are cells with dangerous off-target edits also the ones with the desired therapeutic modifications? Answering this question is crucial for confidently selecting the safest and most effective candidates for your cell and gene therapy.

Targeted gene expression

Directly connect your CRISPR gene edits or modifications to their downstream functional gene expression. By adding targeted gene expression analysis to your cell and gene therapy assay, you can measure relevant gene expression changes in the very same cell you are analyzing for VCN or gene editing outcomes.

Our dedicated Cell and Gene Therapy Assay Development Services team partners with you to build the robust assays needed to fully characterize your therapy, providing the quantitative, single-cell insights required at each phase of development. To get started, talk to our dedicated scientists to start mapping out your custom, fit-for-purpose cell and gene therapy assays today.

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